Stytra
0.8
Overview
Introduction
The structure of Stytra
Stimulation
Image acquisition and tracking
Closed-loop stimuli design
Synchronizing stimulation with data acquisition
Hardware description
Comparison with existing software and limitations
Experiment replication
References
User guide
Installation
Designing and running experiments
User interface
Tracking configuration
Calibration
Configuring a computer for Stytra experiments
Coordinate systems in Stytra
Offline use of Stytra
Frequently Asked Questions
Developer guide
Module description
Implementation of image processing pipelines
Triggering a Stytra protocol
Data and metadata saving
Parameters in stytra
Process status messages
Stytra
Docs
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Index
Index
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Z
A
abort_start() (stytra.experiments.Experiment method)
Accumulator (class in stytra.collectors.accumulators)
acknowledge_changes() (stytra.tracking.pipelines.ImageToDataNode method)
(stytra.tracking.pipelines.ImageToImageNode method)
AcuteClosedLoop1D (class in stytra.stimulation.stimuli.closed_loop)
add_dock() (stytra.gui.container_windows.ExperimentWindow method)
add_framerate() (stytra.gui.framerate_viewer.MultiFrameratesWidget method)
add_static_data() (stytra.collectors.data_collector.DataCollector method)
add_stream() (stytra.gui.multiscope.MultiStreamPlot method)
addMessage() (stytra.gui.status_display.StatusMessageDisplay method)
addMessageQueue() (stytra.gui.status_display.StatusMessageDisplay method)
angle_mean() (in module stytra.gui.fishplots)
AnglesTrackingMethod (class in stytra.tracking.tail)
AnimalMetadata (class in stytra.metadata)
arr_to_tuple() (stytra.calibration.CircleCalibrator static method)
AvtCamera (class in stytra.hardware.video.cameras.avt)
B
BackgroundStimulus (class in stytra.stimulation.stimuli.visual)
BackgroundSubtractor (class in stytra.tracking.preprocessing)
Basic_CL_1D (class in stytra.stimulation.stimuli.closed_loop)
bout_ended() (stytra.stimulation.stimuli.closed_loop.Basic_CL_1D method)
(stytra.stimulation.stimuli.closed_loop.CalibratingClosedLoop1D method)
bout_occurring() (stytra.stimulation.stimuli.closed_loop.Basic_CL_1D method)
(stytra.stimulation.stimuli.closed_loop.CalibratingClosedLoop1D method)
bout_started() (stytra.stimulation.stimuli.closed_loop.AcuteClosedLoop1D method)
(stytra.stimulation.stimuli.closed_loop.Basic_CL_1D method)
(stytra.stimulation.stimuli.closed_loop.CalibratingClosedLoop1D method)
BoutPlot (class in stytra.gui.fishplots)
BoutState (class in stytra.tracking.online_bouts)
C
calculate_final_vel() (stytra.stimulation.stimuli.closed_loop.Basic_CL_1D method)
(stytra.stimulation.stimuli.closed_loop.GainLagClosedLoop1D method)
calibrate() (stytra.gui.monitor_control.ProjectorAndCalibrationWidget method)
CalibratingClosedLoop1D (class in stytra.stimulation.stimuli.closed_loop)
CalibrationException
Calibrator (class in stytra.calibration)
cam (stytra.hardware.video.cameras.interface.Camera attribute)
Camera (class in stytra.hardware.video.cameras.interface)
CameraControlParameters (class in stytra.hardware.video)
CameraExperimentWindow (class in stytra.gui.container_windows)
CameraSelection (class in stytra.gui.camera_display)
CameraSource (class in stytra.hardware.video)
CameraViewCalib (class in stytra.gui.camera_display)
CameraViewFish (class in stytra.gui.camera_display)
CameraViewWidget (class in stytra.gui.camera_display)
CameraVisualExperiment (class in stytra.experiments.tracking_experiments)
cell_distance() (stytra.stimulation.stimuli.backgrounds.Grid method)
cellify() (stytra.stimulation.stimuli.backgrounds.Grid method)
CenteringWrapper (class in stytra.stimulation.stimuli.conditional)
CentroidTrackingMethod (class in stytra.tracking.tail)
change_folder_gui() (stytra.gui.container_windows.ExperimentWindow method)
changed() (stytra.tracking.fish.FishTrackingMethod method)
(stytra.tracking.pipelines.PipelineNode method)
(stytra.tracking.tail.TailTrackingMethod method)
chceck_condition_off() (stytra.stimulation.stimuli.conditional.SingleConditionalWrapper method)
check() (stytra.stimulation.stimuli.backgrounds.Grid method)
check_condition() (stytra.stimulation.stimuli.conditional.PauseOutsideStimulus method)
check_condition_off() (stytra.stimulation.stimuli.conditional.ConditionalWrapper method)
(stytra.stimulation.stimuli.conditional.TwoRadiusCenteringWrapper method)
check_condition_on() (stytra.stimulation.stimuli.conditional.CenteringWrapper method)
(stytra.stimulation.stimuli.conditional.ConditionalWrapper method)
(stytra.stimulation.stimuli.conditional.TwoRadiusCenteringWrapper method)
check_trigger() (stytra.examples.custom_trigger_exp.NewFileTrigger method)
(stytra.experiments.Experiment method)
(stytra.triggering.Trigger method)
(stytra.triggering.U3LabJackPulseTrigger method)
(stytra.triggering.ZmqTrigger method)
CircleCalibrator (class in stytra.calibration)
CircleStimulus (class in stytra.stimulation.stimuli.visual)
clear() (stytra.stimulation.stimuli.backgrounds.Grid method)
clip() (stytra.stimulation.stimuli.visual.VisualStimulus method)
ClosedLoop1DProt (class in stytra.examples.closed_loop_exp)
(class in stytra.examples.self_calib_cl_exp)
closeEvent() (stytra.gui.container_windows.ExperimentWindow method)
columns (stytra.collectors.accumulators.DataFrameAccumulator attribute)
(stytra.collectors.accumulators.DynamicLog attribute)
CombinedProtocol (class in stytra.examples.combined_conditional_exp)
(class in stytra.examples.combined_exp)
complete() (stytra.hardware.video.write.H5VideoWriter method)
(stytra.hardware.video.write.StreamingVideoWriter method)
(stytra.hardware.video.write.VideoWriter method)
ConditionalCombiner (class in stytra.examples.combined_conditional_exp)
ConditionalWrapper (class in stytra.stimulation.stimuli.conditional)
configure() (stytra.hardware.video.write.StreamingVideoWriter method)
(stytra.hardware.video.write.VideoWriter method)
construct_ui() (stytra.gui.container_windows.CameraExperimentWindow method)
(stytra.gui.container_windows.DynamicStimExperimentWindow method)
(stytra.gui.container_windows.ExperimentWindow method)
(stytra.gui.container_windows.TrackingExperimentWindow method)
(stytra.gui.container_windows.VisualExperimentWindow method)
convert() (stytra.stimulation.stimuli.backgrounds.Grid method)
create_pattern() (stytra.stimulation.stimuli.visual.GratingStimulus method)
(stytra.stimulation.stimuli.visual.WindmillStimulus method)
CrossCalibrator (class in stytra.calibration)
curve (stytra.gui.multiscope.PlotTuple attribute)
curve_label (stytra.gui.multiscope.PlotTuple attribute)
CustomExperiment (class in stytra.examples.custom_exp)
CustomProtocol (class in stytra.examples.custom_visual_exp)
D
data (stytra.tracking.pipelines.NodeOutput attribute)
Database (class in stytra.utilities)
DataCollector (class in stytra.collectors.data_collector)
DataFrameAccumulator (class in stytra.collectors.accumulators)
debug (stytra.hardware.video.cameras.interface.Camera attribute)
deserialize_params() (stytra.tracking.pipelines.Pipeline method)
detect() (stytra.tracking.tail.AnglesTrackingMethod method)
diagnostic_image (stytra.tracking.pipelines.Pipeline attribute)
DispatchProcess (class in stytra.tracking.tracking_process)
display_calibration_pattern() (stytra.gui.monitor_control.ProjectorViewer method)
display_stimulus() (stytra.stimulation.stimulus_display.StimDisplayWidget method)
DisplayedMessage (class in stytra.gui.status_display)
distance() (stytra.stimulation.stimuli.backgrounds.Grid method)
draw_block() (stytra.stimulation.stimuli.visual.BackgroundStimulus method)
(stytra.stimulation.stimuli.visual.GratingStimulus method)
(stytra.stimulation.stimuli.visual.HighResWindmillStimulus method)
(stytra.stimulation.stimuli.visual.PaintGratingStimulus method)
(stytra.stimulation.stimuli.visual.SeamlessImageStimulus method)
(stytra.stimulation.stimuli.visual.WindmillStimulus method)
duration (stytra.stimulation.ProtocolRunner attribute)
dynamic_parameter_names (stytra.stimulation.stimuli.conditional.ConditionalWrapper attribute)
(stytra.stimulation.stimuli.conditional.PauseOutsideStimulus attribute)
(stytra.stimulation.stimuli.generic_stimuli.DynamicStimulus attribute)
(stytra.stimulation.stimuli.visual.StimulusCombiner attribute)
DynamicLog (class in stytra.collectors.accumulators)
DynamicLuminanceStimulus (class in stytra.stimulation.stimuli.visual)
DynamicStimExperimentWindow (class in stytra.gui.container_windows)
DynamicStimulus (class in stytra.stimulation.stimuli.generic_stimuli)
E
edit_params() (stytra.gui.fishplots.BoutPlot method)
emit() (stytra.gui.container_windows.QPlainTextEditLogger method)
EmptyProtocol (class in stytra.offline.track_video)
end_protocol() (stytra.experiments.camera_recording_experiment.VideoRecordingExperiment method)
(stytra.experiments.Experiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
Estimator (class in stytra.stimulation.estimators)
EstimatorLog (class in stytra.collectors.accumulators)
excepthook() (stytra.experiments.Experiment method)
(stytra.experiments.tracking_experiments.CameraVisualExperiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
existing_file_background() (in module stytra.stimulation.stimuli.backgrounds)
Experiment (class in stytra.experiments)
ExperimentWindow (class in stytra.gui.container_windows)
EyeTailTrackingPipeline (class in stytra.experiments.fish_pipelines)
EyeTailTrackingSelection (class in stytra.gui.camera_display)
EyeTrackingMethod (class in stytra.tracking.eyes)
EyeTrackingPipeline (class in stytra.experiments.fish_pipelines)
EyeTrackingSelection (class in stytra.gui.camera_display)
F
filename_base() (stytra.experiments.Experiment method)
filename_prefix() (stytra.experiments.Experiment method)
find_bouts_online (in module stytra.tracking.online_bouts)
find_fish_midline (in module stytra.tracking.tail)
find_transform_matrix() (stytra.calibration.CircleCalibrator method)
fish_start (in module stytra.tracking.fish)
FishOverlayStimulus (class in stytra.stimulation.stimuli.visual)
FishTrackingMethod (class in stytra.tracking.fish)
FishTrackingPipeline (class in stytra.experiments.fish_pipelines)
FishTrackingStimulus (class in stytra.stimulation.stimuli.closed_loop)
FixationCrossStimulus (class in stytra.stimulation.stimuli.visual)
FlashProtocol (class in stytra.examples.custom_exp)
(class in stytra.examples.custom_trigger_exp)
(class in stytra.examples.flash_exp)
(class in stytra.examples.most_basic_exp)
(class in stytra.examples.no_stytra_exp)
(class in stytra.examples.stimulus_trigger_exp)
(class in stytra.examples.zmq_trigger_exp)
flip_icon() (stytra.gui.buttons.ToggleIconButton method)
folder_name (stytra.experiments.Experiment attribute)
FrameProcess (class in stytra.utilities)
FramerateAccumulator (class in stytra.collectors.accumulators)
FrameratePlot (class in stytra.gui.multiscope)
FramerateQueueAccumulator (class in stytra.collectors.accumulators)
FramerateRecorder (class in stytra.utilities)
FramerateWidget (class in stytra.gui.framerate_viewer)
FullFieldProtocol (class in stytra.tests.record_stimuli)
FullFieldVisualStimulus (class in stytra.stimulation.stimuli.visual)
G
GainChangerStimulus (class in stytra.stimulation.stimuli.closed_loop)
GainLagClosedLoop1D (class in stytra.stimulation.stimuli.closed_loop)
GeneralMetadata (class in stytra.metadata)
generate() (stytra.stimulation.stimuli.backgrounds.Grid method)
GenerateStimuliMovie (class in stytra.tests.record_stimuli)
get() (stytra.collectors.namedtuplequeue.NamedTupleQueue method)
(stytra.hardware.video.ring_buffer.RingBuffer method)
get_camera_position() (stytra.stimulation.estimators.PositionEstimator method)
get_classes_from_module() (in module stytra.utilities)
get_clean_dict() (stytra.collectors.data_collector.DataCollector method)
get_colors() (stytra.gui.multiscope.MultiStreamPlot static method)
get_dataframe() (stytra.collectors.accumulators.DataFrameAccumulator method)
get_default_args() (in module stytra.utilities)
get_dynamic_state() (stytra.stimulation.stimuli.conditional.ConditionalWrapper method)
(stytra.stimulation.stimuli.conditional.PauseOutsideStimulus method)
(stytra.stimulation.stimuli.generic_stimuli.DynamicStimulus method)
(stytra.stimulation.stimuli.visual.StimulusCombiner method)
get_fish_vel() (stytra.stimulation.stimuli.closed_loop.Basic_CL_1D method)
(stytra.stimulation.stimuli.closed_loop.GainLagClosedLoop1D method)
get_fps() (stytra.collectors.accumulators.DataFrameAccumulator method)
get_icon() (in module stytra.gui.buttons)
get_istantaneous_velocity() (stytra.stimulation.estimators.PositionEstimator method)
get_last_n() (stytra.collectors.accumulators.DataFrameAccumulator method)
get_last_t() (stytra.collectors.accumulators.DataFrameAccumulator method)
get_last_value() (stytra.collectors.data_collector.DataCollector method)
get_most_recent() (stytra.hardware.video.ring_buffer.RingBuffer method)
get_movie() (stytra.stimulation.stimulus_display.StimDisplayWidget method)
get_position() (stytra.stimulation.estimators.PositionEstimator method)
get_rot_transform() (stytra.stimulation.stimuli.visual.BackgroundStimulus method)
get_state() (stytra.stimulation.stimuli.conditional.ConditionalWrapper method)
(stytra.stimulation.stimuli.conditional.PauseOutsideStimulus method)
(stytra.stimulation.stimuli.generic_stimuli.Stimulus method)
(stytra.stimulation.stimuli.visual.StimulusCombiner method)
get_stim_sequence() (stytra.examples.camera_record_exp.PauseProtocol method)
(stytra.examples.closed_loop_exp.ClosedLoop1DProt method)
(stytra.examples.combined_conditional_exp.CombinedProtocol method)
(stytra.examples.combined_exp.CombinedProtocol method)
(stytra.examples.custom_exp.FlashProtocol method)
(stytra.examples.custom_trigger_exp.FlashProtocol method)
(stytra.examples.custom_visual_exp.CustomProtocol method)
(stytra.examples.display_camera_exp.Nostim method)
(stytra.examples.display_opencv_cam.Nostim method)
(stytra.examples.flash_exp.FlashProtocol method)
(stytra.examples.gratings_exp.GratingsProtocol method)
(stytra.examples.imaging_exp.ImagingCLProtocol method)
(stytra.examples.looming_exp.LoomingProtocol method)
(stytra.examples.most_basic_exp.FlashProtocol method)
(stytra.examples.no_stytra_exp.FlashProtocol method)
(stytra.examples.phototaxis.PhototaxisProtocol method)
(stytra.examples.portugues2011_exp.Portugues2011Protocol method)
(stytra.examples.self_calib_cl_exp.ClosedLoop1DProt method)
(stytra.examples.stimulus_trigger_exp.FlashProtocol method)
(stytra.examples.windmill_exp.WindmillProtocol method)
(stytra.examples.zmq_trigger_exp.FlashProtocol method)
(stytra.offline.track_video.EmptyProtocol method)
(stytra.stimulation.Protocol method)
(stytra.tests.record_stimuli.FullFieldProtocol method)
(stytra.tests.record_stimuli.GratingProtocol method)
(stytra.tests.record_stimuli.KinematogramProtocol method)
(stytra.tests.record_stimuli.OKRProtocol method)
(stytra.tests.record_stimuli.RadialSine method)
(stytra.tests.record_stimuli.SeamlessImageProtocol method)
get_unit_dims() (stytra.stimulation.stimuli.visual.BackgroundStimulus method)
(stytra.stimulation.stimuli.visual.GratingStimulus method)
(stytra.stimulation.stimuli.visual.PaintGratingStimulus method)
(stytra.stimulation.stimuli.visual.SeamlessImageStimulus method)
get_velocity() (stytra.stimulation.estimators.PositionEstimator method)
(stytra.stimulation.estimators.VigorMotionEstimator method)
go_live() (stytra.experiments.tracking_experiments.CameraVisualExperiment method)
GratingProtocol (class in stytra.tests.record_stimuli)
gratings() (in module stytra.stimulation.stimuli.backgrounds)
GratingsProtocol (class in stytra.examples.gratings_exp)
GratingStimulus (class in stytra.stimulation.stimuli.visual)
Grid (class in stytra.stimulation.stimuli.backgrounds)
H
H5VideoWriter (class in stytra.hardware.video.write)
HalfFieldStimulus (class in stytra.stimulation.stimuli.visual)
header_dict (stytra.collectors.accumulators.DataFrameAccumulator attribute)
headers_to_plot (stytra.tracking.pipelines.Pipeline attribute)
HighResMovingWindmillStimulus (class in stytra.stimulation.stimuli.visual)
HighResWindmillStimulus (class in stytra.stimulation.stimuli.visual)
I
i_below (stytra.tracking.online_bouts.BoutState attribute)
i_inbout (stytra.tracking.online_bouts.BoutState attribute)
IconButton (class in stytra.gui.buttons)
ImageToDataNode (class in stytra.tracking.pipelines)
ImageToImageNode (class in stytra.tracking.pipelines)
ImagingCLProtocol (class in stytra.examples.imaging_exp)
imports() (in module stytra.experiments)
ingest_frame() (stytra.hardware.video.write.H5VideoWriter method)
(stytra.hardware.video.write.StreamingVideoWriter method)
(stytra.hardware.video.write.VideoWriter method)
initialise_external() (stytra.stimulation.stimuli.conditional.ConditionalWrapper method)
(stytra.stimulation.stimuli.conditional.PauseOutsideStimulus method)
(stytra.stimulation.stimuli.external.PybPulseStimulus method)
(stytra.stimulation.stimuli.generic_stimuli.Stimulus method)
(stytra.stimulation.stimuli.visual.GratingStimulus method)
(stytra.stimulation.stimuli.visual.SeamlessImageStimulus method)
(stytra.stimulation.stimuli.visual.StimulusCombiner method)
(stytra.stimulation.stimuli.visual.VideoStimulus method)
(stytra.stimulation.stimuli.visual.WindmillStimulus method)
initialise_roi() (stytra.gui.camera_display.CameraSelection method)
initialize_plots() (stytra.experiments.Experiment method)
(stytra.experiments.tracking_experiments.CameraVisualExperiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
inner_loop() (stytra.hardware.video.VideoFileSource method)
inset_experiment_data() (stytra.utilities.Database method)
interpolate_nan() (in module stytra.utilities)
InterpolatedStimulus (class in stytra.stimulation.stimuli.generic_stimuli)
InterpolatedU3LabJackVoltageStimulus (class in stytra.stimulation.stimuli.voltage_stimuli)
InterpolatedVoltageStimulus (class in stytra.stimulation.stimuli.voltage_stimuli)
is_empty() (stytra.collectors.accumulators.DataFrameAccumulator method)
is_expired() (stytra.gui.status_display.DisplayedMessage method)
K
KinematogramProtocol (class in stytra.tests.record_stimuli)
L
LoomingProtocol (class in stytra.examples.looming_exp)
LoomingStimulus (class in stytra.examples.looming_exp)
M
make_points() (stytra.stimulation.stimuli.backgrounds.Grid method)
make_window() (stytra.experiments.Experiment method)
(stytra.experiments.VisualExperiment method)
(stytra.experiments.tracking_experiments.CameraVisualExperiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
max_label (stytra.gui.multiscope.PlotTuple attribute)
messages (stytra.tracking.pipelines.NodeOutput attribute)
MikrotronCLCamera (class in stytra.hardware.video.cameras.mikrotron)
min_label (stytra.gui.multiscope.PlotTuple attribute)
MovingGratingStimulus (class in stytra.stimulation.stimuli.visual)
MovingWindmillStimulus (class in stytra.stimulation.stimuli.visual)
MultiFrameratesWidget (class in stytra.gui.framerate_viewer)
MultiStreamPlot (class in stytra.gui.multiscope)
N
n_after (stytra.tracking.online_bouts.BoutState attribute)
name (stytra.examples.camera_record_exp.PauseProtocol attribute)
(stytra.examples.closed_loop_exp.ClosedLoop1DProt attribute)
(stytra.examples.combined_conditional_exp.CombinedProtocol attribute)
(stytra.examples.combined_exp.CombinedProtocol attribute)
(stytra.examples.custom_exp.FlashProtocol attribute)
(stytra.examples.custom_trigger_exp.FlashProtocol attribute)
(stytra.examples.custom_visual_exp.CustomProtocol attribute)
(stytra.examples.display_camera_exp.Nostim attribute)
(stytra.examples.display_opencv_cam.Nostim attribute)
(stytra.examples.eye_tracking_exp.TrackingWindmillProtocol attribute)
(stytra.examples.flash_exp.FlashProtocol attribute)
(stytra.examples.gratings_exp.GratingsProtocol attribute)
(stytra.examples.imaging_exp.ImagingCLProtocol attribute)
(stytra.examples.looming_exp.LoomingProtocol attribute)
(stytra.examples.looming_exp.LoomingStimulus attribute)
(stytra.examples.most_basic_exp.FlashProtocol attribute)
(stytra.examples.no_stytra_exp.FlashProtocol attribute)
(stytra.examples.phototaxis.PhototaxisProtocol attribute)
(stytra.examples.portugues2011_exp.Portugues2011Protocol attribute)
(stytra.examples.self_calib_cl_exp.ClosedLoop1DProt attribute)
(stytra.examples.stimulus_trigger_exp.FlashProtocol attribute)
(stytra.examples.tail_tracking_exp.TrackingGratingsProtocol attribute)
(stytra.examples.windmill_exp.WindmillProtocol attribute)
(stytra.examples.zmq_trigger_exp.FlashProtocol attribute)
(stytra.offline.track_video.EmptyProtocol attribute)
(stytra.stimulation.Protocol attribute)
(stytra.stimulation.stimuli.voltage_stimuli.SetU3LabJackVoltageStimulus attribute)
(stytra.tests.record_stimuli.FullFieldProtocol attribute)
(stytra.tests.record_stimuli.GratingProtocol attribute)
(stytra.tests.record_stimuli.KinematogramProtocol attribute)
(stytra.tests.record_stimuli.OKRProtocol attribute)
(stytra.tests.record_stimuli.RadialSine attribute)
(stytra.tests.record_stimuli.SeamlessImageProtocol attribute)
(stytra.tracking.eyes.EyeTrackingMethod attribute)
NamedTupleQueue (class in stytra.collectors.namedtuplequeue)
neighbors() (stytra.stimulation.stimuli.backgrounds.Grid method)
NewFileTrigger (class in stytra.examples.custom_trigger_exp)
NewStimulus (class in stytra.examples.custom_visual_exp)
NIVoltageStimulus (class in stytra.stimulation.stimuli.voltage_stimuli)
NodeOutput (class in stytra.tracking.pipelines)
noise_background() (in module stytra.stimulation.stimuli.backgrounds)
normalise_bout() (in module stytra.gui.fishplots)
Nostim (class in stytra.examples.display_camera_exp)
(class in stytra.examples.display_opencv_cam)
O
OfflineToolbar (class in stytra.offline.track_video)
OKRProtocol (class in stytra.tests.record_stimuli)
open_camera() (stytra.hardware.video.cameras.avt.AvtCamera method)
(stytra.hardware.video.cameras.interface.Camera method)
(stytra.hardware.video.cameras.mikrotron.MikrotronCLCamera method)
(stytra.hardware.video.cameras.opencv.OpenCVCamera method)
(stytra.hardware.video.cameras.spinnaker.SpinnakerCamera method)
(stytra.hardware.video.cameras.ximea.XimeaCamera method)
open_tracking_params_tree() (stytra.gui.container_windows.TrackingExperimentWindow method)
OpenCVCamera (class in stytra.hardware.video.cameras.opencv)
output_type_changed (stytra.tracking.pipelines.ImageToDataNode attribute)
(stytra.tracking.pipelines.ImageToImageNode attribute)
(stytra.tracking.pipelines.PipelineNode attribute)
P
paint() (stytra.examples.custom_visual_exp.NewStimulus method)
(stytra.stimulation.stimuli.conditional.CenteringWrapper method)
(stytra.stimulation.stimuli.conditional.ConditionalWrapper method)
(stytra.stimulation.stimuli.conditional.PauseOutsideStimulus method)
(stytra.stimulation.stimuli.conditional.TwoRadiusCenteringWrapper method)
(stytra.stimulation.stimuli.visual.BackgroundStimulus method)
(stytra.stimulation.stimuli.visual.CircleStimulus method)
(stytra.stimulation.stimuli.visual.FishOverlayStimulus method)
(stytra.stimulation.stimuli.visual.FixationCrossStimulus method)
(stytra.stimulation.stimuli.visual.FullFieldVisualStimulus method)
(stytra.stimulation.stimuli.visual.HalfFieldStimulus method)
(stytra.stimulation.stimuli.visual.RadialSineStimulus method)
(stytra.stimulation.stimuli.visual.StimulusCombiner method)
(stytra.stimulation.stimuli.visual.VideoStimulus method)
(stytra.stimulation.stimuli.visual.VisualStimulus method)
paint_calibration_pattern() (stytra.calibration.Calibrator method)
(stytra.calibration.CircleCalibrator method)
(stytra.calibration.CrossCalibrator method)
paintEvent() (stytra.gui.framerate_viewer.FramerateWidget method)
(stytra.stimulation.stimulus_display.StimDisplayWidget method)
PaintGratingStimulus (class in stytra.stimulation.stimuli.visual)
Pause (class in stytra.stimulation.stimuli.visual)
PauseOutsideStimulus (class in stytra.stimulation.stimuli.conditional)
PauseProtocol (class in stytra.examples.camera_record_exp)
PerpendicularMotion (class in stytra.stimulation.stimuli.closed_loop)
PhototaxisProtocol (class in stytra.examples.phototaxis)
Pipeline (class in stytra.tracking.pipelines)
PipelineNode (class in stytra.tracking.pipelines)
PlotTuple (class in stytra.gui.multiscope)
points_to_angles (in module stytra.tracking.fish)
poisson() (stytra.stimulation.stimuli.backgrounds.Grid method)
poisson_disk_background() (in module stytra.stimulation.stimuli.backgrounds)
Portugues2011Protocol (class in stytra.examples.portugues2011_exp)
PositionEstimator (class in stytra.stimulation.estimators)
PositionStimulus (class in stytra.stimulation.stimuli.visual)
predict_inplace (in module stytra.tracking.simple_kalman)
Prefilter (class in stytra.tracking.preprocessing)
prepare_json() (in module stytra.utilities)
print() (stytra.stimulation.ProtocolRunner method)
process() (stytra.tracking.pipelines.PipelineNode method)
process_internal() (stytra.tracking.tracking_process.TrackingProcess method)
ProjectorAndCalibrationWidget (class in stytra.gui.monitor_control)
ProjectorViewer (class in stytra.gui.monitor_control)
Protocol (class in stytra.stimulation)
ProtocolControlToolbar (class in stytra.gui.protocol_control)
ProtocolRunner (class in stytra.stimulation)
put() (stytra.collectors.namedtuplequeue.NamedTupleQueue method)
(stytra.hardware.video.ring_buffer.RingBuffer method)
put_frame() (stytra.hardware.video.VideoSource method)
PybPulseStimulus (class in stytra.stimulation.stimuli.external)
Q
QPlainTextEditLogger (class in stytra.gui.container_windows)
QueueDataAccumulator (class in stytra.collectors.accumulators)
R
RadialSine (class in stytra.tests.record_stimuli)
RadialSineStimulus (class in stytra.stimulation.stimuli.visual)
read() (stytra.hardware.video.cameras.avt.AvtCamera method)
(stytra.hardware.video.cameras.interface.Camera method)
(stytra.hardware.video.cameras.mikrotron.MikrotronCLCamera method)
(stytra.hardware.video.cameras.opencv.OpenCVCamera method)
(stytra.hardware.video.cameras.spinnaker.SpinnakerCamera method)
(stytra.hardware.video.cameras.ximea.XimeaCamera method)
read_scope_data() (stytra.experiments.Experiment method)
recursive_run() (stytra.tracking.pipelines.Pipeline method)
recursive_update() (in module stytra.utilities)
reduce_to_pi (in module stytra.utilities)
refresh() (stytra.gui.status_display.DisplayedMessage method)
(stytra.gui.status_display.StatusMessageDisplay method)
refresh_plots() (stytra.experiments.tracking_experiments.TrackingExperiment method)
(stytra.gui.multiscope.StreamPlotConfig method)
refresh_streams() (stytra.gui.multiscope.MultiStreamPlot method)
release() (stytra.hardware.video.cameras.avt.AvtCamera method)
(stytra.hardware.video.cameras.interface.Camera method)
(stytra.hardware.video.cameras.mikrotron.MikrotronCLCamera method)
(stytra.hardware.video.cameras.opencv.OpenCVCamera method)
(stytra.hardware.video.cameras.spinnaker.SpinnakerCamera method)
(stytra.hardware.video.cameras.ximea.XimeaCamera method)
remove_streams() (stytra.gui.multiscope.MultiStreamPlot method)
reset() (stytra.collectors.accumulators.DataFrameAccumulator method)
(stytra.collectors.accumulators.FramerateAccumulator method)
(stytra.experiments.Experiment method)
(stytra.experiments.tracking_experiments.CameraVisualExperiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
(stytra.hardware.video.write.H5VideoWriter method)
(stytra.hardware.video.write.StreamingVideoWriter method)
(stytra.hardware.video.write.VideoWriter method)
(stytra.stimulation.ProtocolRunner method)
(stytra.stimulation.estimators.Estimator method)
(stytra.stimulation.estimators.PositionEstimator method)
(stytra.stimulation.stimulus_display.StimDisplayWidget method)
(stytra.tracking.fish.FishTrackingMethod method)
(stytra.tracking.pipelines.PipelineNode method)
(stytra.tracking.preprocessing.BackgroundSubtractor method)
(stytra.tracking.tail.TailTrackingMethod method)
restore_from_saved() (stytra.collectors.data_collector.DataCollector method)
restore_window_state() (stytra.experiments.Experiment method)
(stytra.experiments.VisualExperiment method)
retrieve_image() (stytra.gui.camera_display.CameraViewFish method)
(stytra.gui.camera_display.CameraViewWidget method)
(stytra.gui.camera_display.EyeTrackingSelection method)
(stytra.gui.camera_display.TailTrackingSelection method)
retrieve_params() (stytra.hardware.video.CameraSource method)
(stytra.tracking.tracking_process.TrackingProcess method)
RingBuffer (class in stytra.hardware.video.ring_buffer)
rot_mat() (in module stytra.gui.fishplots)
(in module stytra.stimulation.estimators)
run() (stytra.hardware.video.CameraSource method)
(stytra.hardware.video.VideoFileSource method)
(stytra.hardware.video.write.VideoWriter method)
(stytra.tests.record_stimuli.GenerateStimuliMovie method)
(stytra.tests.test_namedtuplequeue.TupProc method)
(stytra.tracking.pipelines.Pipeline method)
(stytra.tracking.tracking_process.DispatchProcess method)
(stytra.tracking.tracking_process.TrackingProcess method)
(stytra.triggering.Trigger method)
(stytra.triggering.U3LabJackPulseTrigger method)
(stytra.triggering.ZmqTrigger method)
run_stytra() (stytra.offline.track_video.StytraLoader method)
S
save() (stytra.collectors.accumulators.DataFrameAccumulator method)
(stytra.collectors.data_collector.DataCollector method)
save_config_file() (stytra.collectors.data_collector.DataCollector method)
save_data() (stytra.experiments.Experiment method)
(stytra.experiments.VisualExperiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
save_df() (in module stytra.utilities)
save_image() (stytra.gui.camera_display.CameraViewWidget method)
save_json_log() (stytra.collectors.data_collector.DataCollector method)
save_log() (stytra.experiments.Experiment method)
save_params() (stytra.offline.track_video.OfflineToolbar method)
scale_changed() (stytra.gui.camera_display.CameraViewWidget method)
(stytra.gui.camera_display.EyeTrackingSelection method)
(stytra.gui.camera_display.TailTrackingSelection method)
SeamlessImageProtocol (class in stytra.tests.record_stimuli)
SeamlessImageStimulus (class in stytra.stimulation.stimuli.visual)
segmentClicked() (stytra.gui.camera_display.SingleLineROI method)
select_video() (stytra.offline.track_video.StytraLoader method)
send_gui_parameters() (stytra.experiments.tracking_experiments.CameraVisualExperiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
send_to_gui() (stytra.tracking.tracking_process.DispatchProcess method)
(stytra.tracking.tracking_process.TrackingProcess method)
serialize_changed_params() (stytra.tracking.pipelines.Pipeline method)
serialize_params() (stytra.tracking.pipelines.Pipeline method)
set() (stytra.hardware.video.cameras.avt.AvtCamera method)
(stytra.hardware.video.cameras.interface.Camera method)
(stytra.hardware.video.cameras.mikrotron.MikrotronCLCamera method)
(stytra.hardware.video.cameras.opencv.OpenCVCamera method)
(stytra.hardware.video.cameras.spinnaker.SpinnakerCamera method)
(stytra.hardware.video.cameras.ximea.XimeaCamera method)
set_dims() (stytra.stimulation.stimulus_display.StimulusDisplayWindow method)
set_id() (stytra.experiments.Experiment method)
set_param_val() (stytra.gui.monitor_control.ProjectorViewer method)
set_physical_scale() (stytra.calibration.Calibrator method)
set_pixel_scale() (stytra.calibration.Calibrator method)
(stytra.calibration.CircleCalibrator method)
(stytra.calibration.CrossCalibrator method)
set_pos_from_roi() (stytra.gui.camera_display.CameraSelection method)
(stytra.gui.camera_display.EyeTrackingSelection method)
(stytra.gui.camera_display.TailTrackingSelection method)
set_pos_from_tree() (stytra.gui.camera_display.CameraSelection method)
(stytra.gui.camera_display.CameraViewCalib method)
(stytra.gui.camera_display.EyeTrackingSelection method)
(stytra.gui.camera_display.TailTrackingSelection method)
set_protocol() (stytra.experiments.tracking_experiments.TrackingExperiment method)
set_roi() (stytra.gui.monitor_control.ProjectorViewer method)
SetU3LabJackVoltageStimulus (class in stytra.stimulation.stimuli.voltage_stimuli)
setUp() (stytra.tests.record_stimuli.GenerateStimuliMovie method)
setup() (stytra.tracking.pipelines.Pipeline method)
(stytra.tracking.pipelines.PipelineNode method)
SetVoltageStimulus (class in stytra.stimulation.stimuli.voltage_stimuli)
show_calibration() (stytra.gui.camera_display.CameraViewCalib method)
show_extra_plot() (stytra.gui.multiscope.MultiStreamPlot method)
show_metadata_gui() (stytra.gui.container_windows.ExperimentWindow method)
show_params_gui() (stytra.gui.camera_display.CameraViewWidget method)
show_select() (stytra.gui.multiscope.MultiStreamPlot method)
show_stim_params_gui() (stytra.gui.protocol_control.ProtocolControlToolbar method)
show_stimulus_screen() (stytra.experiments.VisualExperiment method)
sig_acc_init (stytra.collectors.accumulators.DataFrameAccumulator attribute)
sig_acc_reset (stytra.collectors.accumulators.DataFrameAccumulator attribute)
sig_calibrating (stytra.gui.monitor_control.ProjectorAndCalibrationWidget attribute)
sig_data_saved (stytra.experiments.Experiment attribute)
(stytra.experiments.VisualExperiment attribute)
sig_dim_changed (stytra.gui.monitor_control.ProjectorViewer attribute)
sig_protocol_finished (stytra.stimulation.ProtocolRunner attribute)
sig_protocol_interrupted (stytra.stimulation.ProtocolRunner attribute)
sig_protocol_started (stytra.stimulation.ProtocolRunner attribute)
sig_protocol_updated (stytra.stimulation.ProtocolRunner attribute)
sig_start_protocol (stytra.gui.protocol_control.ProtocolControlToolbar attribute)
sig_stim_change (stytra.stimulation.ProtocolRunner attribute)
sig_stop_protocol (stytra.gui.protocol_control.ProtocolControlToolbar attribute)
sig_timestep (stytra.stimulation.ProtocolRunner attribute)
SingleConditionalWrapper (class in stytra.stimulation.stimuli.conditional)
SingleLineROI (class in stytra.gui.camera_display)
SourceNode (class in stytra.tracking.pipelines)
SpinnakerCamera (class in stytra.hardware.video.cameras.spinnaker)
start() (stytra.stimulation.ProtocolRunner method)
(stytra.stimulation.stimuli.closed_loop.GainChangerStimulus method)
(stytra.stimulation.stimuli.conditional.ConditionalWrapper method)
(stytra.stimulation.stimuli.conditional.PauseOutsideStimulus method)
(stytra.stimulation.stimuli.external.PybPulseStimulus method)
(stytra.stimulation.stimuli.generic_stimuli.Stimulus method)
(stytra.stimulation.stimuli.generic_stimuli.TriggerStimulus method)
(stytra.stimulation.stimuli.visual.StimulusCombiner method)
(stytra.stimulation.stimuli.voltage_stimuli.SetU3LabJackVoltageStimulus method)
(stytra.stimulation.stimuli.voltage_stimuli.SetVoltageStimulus method)
start_experiment() (stytra.experiments.Experiment method)
(stytra.experiments.VisualExperiment method)
(stytra.experiments.tracking_experiments.CameraVisualExperiment method)
start_protocol() (stytra.examples.custom_exp.CustomExperiment method)
(stytra.experiments.Experiment method)
(stytra.experiments.VisualExperiment method)
(stytra.experiments.camera_recording_experiment.VideoRecordingExperiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
state (stytra.tracking.online_bouts.BoutState attribute)
StatusMessageDisplay (class in stytra.gui.status_display)
StimDisplayWidget (class in stytra.stimulation.stimulus_display)
Stimulus (class in stytra.stimulation.stimuli.generic_stimuli)
StimulusCombiner (class in stytra.stimulation.stimuli.visual)
StimulusDisplayWindow (class in stytra.stimulation.stimulus_display)
stop() (stytra.stimulation.ProtocolRunner method)
(stytra.stimulation.stimuli.closed_loop.CalibratingClosedLoop1D method)
(stytra.stimulation.stimuli.generic_stimuli.Stimulus method)
(stytra.stimulation.stimuli.visual.StimulusCombiner method)
StreamingPositionPlot (class in stytra.gui.fishplots)
StreamingVideoWriter (class in stytra.hardware.video.write)
StreamPlotConfig (class in stytra.gui.multiscope)
strip_values() (in module stytra.utilities)
strpath (stytra.tracking.pipelines.PipelineNode attribute)
stytra
Stytra (class in stytra)
stytra (module)
stytra.calibration
(module)
stytra.collectors (module)
stytra.collectors.accumulators (module)
stytra.collectors.data_collector (module)
stytra.collectors.namedtuplequeue (module)
stytra.examples (module)
stytra.examples.camera_record_exp (module)
stytra.examples.closed_loop_exp (module)
stytra.examples.combined_conditional_exp (module)
stytra.examples.combined_exp (module)
stytra.examples.custom_exp (module)
stytra.examples.custom_trigger_exp (module)
stytra.examples.custom_visual_exp (module)
stytra.examples.display_camera_exp (module)
stytra.examples.display_opencv_cam (module)
stytra.examples.eye_tracking_exp (module)
stytra.examples.flash_exp (module)
stytra.examples.gratings_exp (module)
stytra.examples.imaging_exp (module)
stytra.examples.looming_exp (module)
stytra.examples.most_basic_exp (module)
stytra.examples.no_stytra_exp (module)
stytra.examples.phototaxis (module)
stytra.examples.plot_dynamic_exp (module)
stytra.examples.portugues2011_exp (module)
stytra.examples.self_calib_cl_exp (module)
stytra.examples.stimulus_trigger_exp (module)
stytra.examples.tail_tracking_exp (module)
stytra.examples.windmill_exp (module)
stytra.examples.zmq_trigger (module)
stytra.examples.zmq_trigger_exp (module)
stytra.experiments
(module)
stytra.experiments.camera_recording_experiment (module)
stytra.experiments.fish_pipelines (module)
stytra.experiments.tracking_experiments (module)
stytra.gui
(module)
stytra.gui.buttons (module)
stytra.gui.camera_display (module)
stytra.gui.container_windows (module)
stytra.gui.fishplots (module)
stytra.gui.framerate_viewer (module)
stytra.gui.monitor_control (module)
stytra.gui.multiscope (module)
stytra.gui.protocol_control (module)
stytra.gui.status_display (module)
stytra.hardware
(module)
stytra.hardware.video (module)
stytra.hardware.video.cameras (module)
stytra.hardware.video.cameras.avt (module)
stytra.hardware.video.cameras.interface (module)
stytra.hardware.video.cameras.mikrotron (module)
stytra.hardware.video.cameras.opencv (module)
stytra.hardware.video.cameras.spinnaker (module)
stytra.hardware.video.cameras.ximea (module)
stytra.hardware.video.ring_buffer (module)
stytra.hardware.video.write (module)
stytra.metadata
(module)
stytra.offline (module)
stytra.offline.track_video (module)
stytra.stimulation
(module)
stytra.stimulation.estimators (module)
stytra.stimulation.stimuli (module)
stytra.stimulation.stimuli.backgrounds (module)
stytra.stimulation.stimuli.closed_loop (module)
stytra.stimulation.stimuli.conditional (module)
stytra.stimulation.stimuli.external (module)
stytra.stimulation.stimuli.generic_stimuli (module)
stytra.stimulation.stimuli.visual (module)
stytra.stimulation.stimuli.voltage_stimuli (module)
stytra.stimulation.stimulus_display (module)
stytra.tests (module)
stytra.tests.record_stimuli (module)
stytra.tests.test_kalman (module)
stytra.tests.test_namedtuplequeue (module)
stytra.tests.test_online_bout_detection (module)
stytra.tests.test_pipeline (module)
stytra.tracking
(module)
stytra.tracking.eyes (module)
stytra.tracking.fish (module)
stytra.tracking.online_bouts (module)
stytra.tracking.pipelines (module)
stytra.tracking.preprocessing (module)
stytra.tracking.simple_kalman (module)
stytra.tracking.tail (module)
stytra.tracking.tracking_process (module)
stytra.triggering
(module)
stytra.utilities (module)
stytra_config (stytra.examples.closed_loop_exp.ClosedLoop1DProt attribute)
(stytra.examples.combined_conditional_exp.CombinedProtocol attribute)
(stytra.examples.custom_visual_exp.CustomProtocol attribute)
(stytra.examples.display_camera_exp.Nostim attribute)
(stytra.examples.display_opencv_cam.Nostim attribute)
(stytra.examples.eye_tracking_exp.TrackingWindmillProtocol attribute)
(stytra.examples.imaging_exp.ImagingCLProtocol attribute)
(stytra.examples.phototaxis.PhototaxisProtocol attribute)
(stytra.examples.portugues2011_exp.Portugues2011Protocol attribute)
(stytra.examples.self_calib_cl_exp.ClosedLoop1DProt attribute)
(stytra.examples.tail_tracking_exp.TrackingGratingsProtocol attribute)
StytraLoader (class in stytra.offline.track_video)
T
t (stytra.collectors.accumulators.DataFrameAccumulator attribute)
tail_dims() (stytra.gui.camera_display.TailTrackingSelection method)
tail_points() (stytra.gui.camera_display.TailTrackingSelection method)
TailStreamPlot (class in stytra.gui.fishplots)
TailTrackingMethod (class in stytra.tracking.tail)
TailTrackingPipeline (class in stytra.experiments.fish_pipelines)
TailTrackingSelection (class in stytra.gui.camera_display)
tearDown() (stytra.tests.record_stimuli.GenerateStimuliMovie method)
test_a_pipeline() (in module stytra.tests.test_pipeline)
test_fish() (in module stytra.tests.test_kalman)
test_ntqueue() (in module stytra.tests.test_namedtuplequeue)
test_online_bout_det() (in module stytra.tests.test_online_bout_detection)
test_stimulus_rendering() (stytra.tests.record_stimuli.GenerateStimuliMovie method)
TestNode (class in stytra.tests.test_pipeline)
TestPipeline (class in stytra.tests.test_pipeline)
timestep() (stytra.stimulation.ProtocolRunner method)
toggle() (stytra.calibration.Calibrator method)
toggle_calibration() (stytra.gui.monitor_control.ProjectorAndCalibrationWidget method)
toggle_db() (stytra.gui.container_windows.ExperimentWindow method)
toggle_freeze() (stytra.gui.multiscope.MultiStreamPlot method)
toggle_icon() (stytra.gui.protocol_control.ProtocolControlToolbar method)
toggle_protocol_running() (stytra.gui.protocol_control.ProtocolControlToolbar method)
ToggleIconButton (class in stytra.gui.buttons)
track() (stytra.offline.track_video.OfflineToolbar method)
TrackingDialog (class in stytra.offline.track_video)
TrackingExperiment (class in stytra.experiments.tracking_experiments)
TrackingExperimentWindow (class in stytra.gui.container_windows)
TrackingGratingsProtocol (class in stytra.examples.tail_tracking_exp)
TrackingProcess (class in stytra.tracking.tracking_process)
TrackingWindmillProtocol (class in stytra.examples.eye_tracking_exp)
Trigger (class in stytra.triggering)
TriggerStimulus (class in stytra.stimulation.stimuli.generic_stimuli)
trim_data() (stytra.collectors.accumulators.DataFrameAccumulator method)
(stytra.collectors.accumulators.FramerateAccumulator method)
TupProc (class in stytra.tests.test_namedtuplequeue)
TwoRadiusCenteringWrapper (class in stytra.stimulation.stimuli.conditional)
U
U3LabJackPulseTrigger (class in stytra.triggering)
U3LabJackVoltageStimulus (class in stytra.stimulation.stimuli.voltage_stimuli)
update() (stytra.examples.combined_conditional_exp.ConditionalCombiner method)
(stytra.examples.custom_visual_exp.NewStimulus method)
(stytra.gui.fishplots.BoutPlot method)
(stytra.gui.fishplots.StreamingPositionPlot method)
(stytra.gui.fishplots.TailStreamPlot method)
(stytra.gui.framerate_viewer.FramerateWidget method)
(stytra.gui.framerate_viewer.MultiFrameratesWidget method)
(stytra.gui.multiscope.FrameratePlot method)
(stytra.gui.multiscope.MultiStreamPlot method)
(stytra.stimulation.stimuli.backgrounds.Grid method)
(stytra.stimulation.stimuli.closed_loop.Basic_CL_1D method)
(stytra.stimulation.stimuli.closed_loop.FishTrackingStimulus method)
(stytra.stimulation.stimuli.closed_loop.PerpendicularMotion method)
(stytra.stimulation.stimuli.conditional.ConditionalWrapper method)
(stytra.stimulation.stimuli.conditional.PauseOutsideStimulus method)
(stytra.stimulation.stimuli.generic_stimuli.InterpolatedStimulus method)
(stytra.stimulation.stimuli.generic_stimuli.Stimulus method)
(stytra.stimulation.stimuli.generic_stimuli.TriggerStimulus method)
(stytra.stimulation.stimuli.visual.DynamicLuminanceStimulus method)
(stytra.stimulation.stimuli.visual.RadialSineStimulus method)
(stytra.stimulation.stimuli.visual.StimulusCombiner method)
(stytra.stimulation.stimuli.visual.VideoStimulus method)
(stytra.stimulation.stimuli.voltage_stimuli.InterpolatedU3LabJackVoltageStimulus method)
(stytra.stimulation.stimuli.voltage_stimuli.InterpolatedVoltageStimulus method)
update_bounds() (stytra.gui.multiscope.FrameratePlot method)
(stytra.gui.multiscope.MultiStreamPlot method)
update_buflen() (stytra.gui.multiscope.MultiStreamPlot method)
update_dynamic_log() (stytra.stimulation.ProtocolRunner method)
update_framerate() (stytra.utilities.FrameProcess method)
(stytra.utilities.FramerateRecorder method)
update_inplace (in module stytra.tracking.simple_kalman)
update_list() (stytra.collectors.accumulators.DynamicLog method)
(stytra.collectors.accumulators.EstimatorLog method)
(stytra.collectors.accumulators.FramerateAccumulator method)
(stytra.collectors.accumulators.FramerateQueueAccumulator method)
(stytra.collectors.accumulators.QueueDataAccumulator method)
update_log() (stytra.stimulation.ProtocolRunner method)
update_params() (stytra.hardware.video.VideoFileSource method)
update_progress() (stytra.gui.protocol_control.ProtocolControlToolbar method)
update_protocol() (stytra.stimulation.ProtocolRunner method)
update_replay_limits() (stytra.gui.multiscope.MultiStreamPlot method)
update_size() (stytra.gui.monitor_control.ProjectorAndCalibrationWidget method)
update_stimuli() (stytra.collectors.accumulators.DynamicLog method)
update_t() (stytra.gui.status_display.DisplayedMessage method)
update_zoom() (stytra.gui.multiscope.MultiStreamPlot method)
V
value_label (stytra.gui.multiscope.PlotTuple attribute)
values_at_abs_time() (stytra.collectors.accumulators.DataFrameAccumulator method)
vel (stytra.tracking.online_bouts.BoutState attribute)
VideoControlParameters (class in stytra.hardware.video)
VideoFileSource (class in stytra.hardware.video)
VideoRecordingExperiment (class in stytra.experiments.camera_recording_experiment)
VideoSource (class in stytra.hardware.video)
VideoStimulus (class in stytra.stimulation.stimuli.visual)
VideoWriter (class in stytra.hardware.video.write)
VigorMotionEstimator (class in stytra.stimulation.estimators)
VisualExperiment (class in stytra.experiments)
VisualExperimentWindow (class in stytra.gui.container_windows)
VisualStimulus (class in stytra.stimulation.stimuli.visual)
W
waitend() (stytra.tests.record_stimuli.GenerateStimuliMovie method)
WindmillProtocol (class in stytra.examples.windmill_exp)
WindmillStimulus (class in stytra.stimulation.stimuli.visual)
wrap_up() (stytra.experiments.camera_recording_experiment.VideoRecordingExperiment method)
(stytra.experiments.Experiment method)
(stytra.experiments.tracking_experiments.CameraVisualExperiment method)
(stytra.experiments.tracking_experiments.TrackingExperiment method)
write_log() (stytra.gui.container_windows.ExperimentWindow method)
X
XimeaCamera (class in stytra.hardware.video.cameras.ximea)
Z
z_func_windmill() (in module stytra.stimulation.stimuli.visual)
ZmqTrigger (class in stytra.triggering)