Dragomir EI, Štih V, Portugues R (2019)
Evidence accumulation during a sensorimotor decision task revealed by whole-brain imaging
Nature Neuroscience volume 23, pages 85–93(2020)


Kist AM, Portugues R (2019)
Optomotor Swimming in Larval Zebrafish Is Driven by Global Whole-Field Visual Motion and Local Light-Dark Transitions
Cell Reports, doi:10.1016/j.celrep.2019.09.024


Fabritius A, Ng D, Kist AM, Erdogan M, Portugues R, Griesbeck O (2018)
Imaging-based screening platform assists protein engineering.
Cell Chemical Biology, doi:10.1016/j.chembiol.2018.08.008


Oteiza P*, Odstrcil I*, Lauder G, Portugues R#, Engert F# (2017)
A novel mechanism for mechanosensory-based rheotaxis in larval zebrafish.
Nature 547 27: 445-448, doi:10/1038/nature23014

News & views: "Biomechanics: how fish feel the flow" , Dabiri JO, Nature 547, 406-407, 2017.

Knogler LD, Markov AD, Dragomir EI, Štih V, Portugues R (2017)
Sensorimotor representations in cerebellar granule cells in larval zebrafish are dense, spatially organized, and non-temporally patterned.
Curr Biol 27: 1288-1302, doi: 10.1016/j.cub.2017.03.029

Dispatch: "Cerebellar granule cells: dense, rich and evolving representations" , Badura and De Zeeuw, Curr Biol 27: R415-R418, 2017.

Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Champion AS, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, Lillaney K, Burns R, Vogelstein JT, Schier AF, Lee WCA, Jeong WK, Lichtman JW, Engert F (2017)
Whole-brain serial-section electron microscopy in larval zebrafish
Nature 545, 345-349, doi:10.1038/nature22356

Kist AM*, Knogler LD*, Markov DA, Yildizoglu T, Portugues R (2017)
Whole-brain imaging using genetically encoded activity sensors in vertebrates.
Decoding neural circuit structure and function, Springer.


Lopes SS, Distel M, Linker C, Fior R, Monteiro R, Bianco IH, Portugues R, Strähle U, Saúde L. (2016)
Report of the 4th European Zebrafish Principal Investigator Meeting.

Orger MB, Portugues R.
Correlating Whole Brain Neural Activity with Behavior in Head-Fixed Larval Zebrafish.
Methods Mol Biol 1451: 307 (2016)


Randlett O, Wee C, Naumann E, Nnaemeka O, Schoppik D, Fitzgerald J, Portugues R, Lacoste AMB, Riegler C, Engert F, Schier AF.
Whole-brain activity mapping onto a zebrafish brain atlas.
Nat Meth 12, 1039-1046 (2015)

Lacoste AMB, Schoppik D, Robson DN, Haesemeyer M, Portugues R, Li JM, Randlett O, Wee CL, Engert F, Schier AF.
A convergent and essential interneuron pathway for Mauthner-cell-mediated escapes.
Curr Biol 25(11): 1526-1534 (2015)

Portugues R*, Haesemeyer M*, Blum ML, Engert F.
Whole-field visual motion drives swimming in larval zebrafish via a stochastic process.
J Exp Biol 218: 1433-1443 (2015)


Rose T, Goltstein PM, Portugues R, Griesbeck O.
Putting a finishing touch on GECIs.
Front Mol Neurosci 7: 88 (2014)

Severi KE*, Portugues R*#, Marques JC, O'Malley DM, Orger MB, Engert F#.
Neural control and modulation of swimming speed in the larval zebrafish.
Neuron 83: 692-707 (2014)

Portugues R*, Feierstein CE*, Engert F, Orger MB.
Whole-brain activity maps reveal stereotyped, distributed networks for visuomotor behavior.
Neuron 81: 1328-1343 (2014)


Portugues R, Severi KE, Wyart C, Ahrens MB.
Optogenetics in a transparent animal: circuit function in the larval zebrafish.
Curr Opin Neurobiol 23: 119-216 (2013)


Akerboom J, Chen T-W, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calder&oacuten NC, Esposti F, Borghuis BG, Sun XR, et al.
Optimization of a GCaMP calcium indicator for neural activity imaging.
J Neurosci 32: 13819-13840 (2012)

Ahrens MB, Li JM, Orger MB, Robson DN, Schier AF, Engert F, Portugues R.
Brain-wide neuronal dynamics during motor adaptation in zebrafish.
Nature 485: 471-477 (2012)

Valente A*, Huang K-H*, Portugues R, Engert F.
Ontogeny of classical and operant learning behaviors in zebrafish.
Learn Mem 19: 170-177 (2012)


Portugues R, Engert F.
Adaptive locomotor behavior in larval zebrafish.
Front Syst Neurosci 5: 72 (2011)


Portugues R, Engert F.
The neural basis of visual behaviors in the larval zebrafish.
Curr Opin Neurobiol 19: 644-647 (2009)

* co-first author

# co-senior author

2001 - 2009

(authors in alphabetical order)

Portugues, R.
Magnetic monopoles in electromagnetism and gravity.
Published in Quantum Mechanics of Fundamental Systems: The Quest for Beauty and Simplicity - Claudio Bunster Festschrift, Henneaux, M; Zanelli, J (Eds.), Springer Verlag 2009.

Edelstein JD, Portugues R.
Gauge/string duality in confining theories.
Fortsch Phys 54: 525-579, HEP-TH 0602021 (2006)

Bunster C, Cnockaert S, Henneaux M, Portugues R.
Monopoles for gravitation and for higher spin fields.
Phys Rev D73:105014, HEP-TH 0601222 (2006)

Hartnoll SA, Portugues R.
Deforming baryons into confining strings.
Phys Rev D70:066007, HEP-TH 0405214 (2004)

Portugues R.
Membrane solitons in eight-dimensional hyperkahler backgrounds.
JHEP 0403:051, HEP-TH 0311099 (2004)

Gursoy U, Hartnoll SA, Portugues R.
The chiral anomaly from M theory.
Phys Rev D69:086003, HEP-TH 0311088 (2004)

Portugues R, Townsend PK.
Sigma model soliton intersections from exceptional calibrations.
JHEP 0204:039, HEP-TH 0203181 (2002)

Portugues R, Townsend PK.
Intersoliton forces in the Wess-Zumino model.
Phys Lett B530:227-234, HEP-TH 0112077 (2002)

Gauntlett JP, Portugues R, Tong D, Townsend PK.
D-brane solitons in supersymmetric sigma models.
Phys Rev D63:085002, HEP-TH 0008221 (2001)